Detailed information of SNP:
|
SNP ID:
sf0400148978(Gbrowse)
Chromosome: chr04 Position: 148978 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 67.66% | 32.34% |
| All Indica | 796 | 90.08% | 9.92% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400148978 | A->G | INTERGENIC | None |