Detailed information of SNP:
|
SNP ID:
sf0400166321(Gbrowse)
Chromosome: chr04 Position: 166321 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 52.31% | 47.69% |
| All Indica | 791 | 17.83% | 82.17% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 15.20% | 84.80% |
| Indica II | 213 | 9.86% | 90.14% |
| Indica Intermediate | 203 | 31.03% | 68.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400166321 | C->A | LOC_Os04g01220(LOC_Os04g01220.1) | Non-Synonymous SNP |