Detailed information of SNP:
|
SNP ID:
sf0400168354(Gbrowse)
Chromosome: chr04 Position: 168354 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 57.39% | 42.61% |
| All Indica | 788 | 28.17% | 71.83% |
| All Japonica | 490 | 98.78% | 1.22% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 367 | 20.16% | 79.84% |
| Indica II | 212 | 22.17% | 77.83% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400168354 | G->A | LOC_Os04g01220(LOC_Os04g01220.1) | Synonymous |