Detailed information of SNP:
|
SNP ID:
sf0400211499(Gbrowse)
Chromosome: chr04 Position: 211499 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.86% | 24.14% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 34.27% | 65.73% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400211499 | A->G | INTERGENIC | None |