Detailed information of SNP:
|
SNP ID:
sf0400214019(Gbrowse)
Chromosome: chr04 Position: 214019 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.18% | 49.82% |
| All Indica | 796 | 85.30% | 14.70% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400214019 | G->A | INTERGENIC | None |