Detailed information of SNP:
|
SNP ID:
sf0400249392(Gbrowse)
Chromosome: chr04 Position: 249392 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 86.97% | 13.03% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 488 | 63.52% | 36.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 48.93% | 51.07% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 8 | 75.00% | 25.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400249392 | A->T | INTERGENIC | None |