Detailed information of SNP:
|
SNP ID:
sf0400256725(Gbrowse)
Chromosome: chr04 Position: 256725 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.73% | 29.27% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 496 | 32.66% | 67.34% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400256725 | A->G | INTERGENIC | None |