Detailed information of SNP:
|
SNP ID:
sf0400285523(Gbrowse)
Chromosome: chr04 Position: 285523 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1215 | 89.71% | 10.29% |
| All Indica | 706 | 91.93% | 8.07% |
| All Japonica | 399 | 86.47% | 13.53% |
| Aus | 60 | 98.33% | 1.67% |
| Indica I | 344 | 95.64% | 4.36% |
| Indica II | 185 | 80.54% | 19.46% |
| Indica Intermediate | 177 | 96.61% | 3.39% |
| Temperate Japonica | 264 | 91.29% | 8.71% |
| Tropical Japonica | 77 | 68.83% | 31.17% |
| Japonica Intermediate | 58 | 87.93% | 12.07% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400285523 | G->A | LOC_Os04g01400(LOC_Os04g01400.1) | Synonymous |