Detailed information of SNP:
|
SNP ID:
sf0400286930(Gbrowse)
Chromosome: chr04 Position: 286930 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 60.55% | 39.45% |
| All Indica | 786 | 73.79% | 26.21% |
| All Japonica | 484 | 35.74% | 64.26% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 372 | 73.66% | 26.34% |
| Indica II | 208 | 75.00% | 25.00% |
| Indica Intermediate | 206 | 72.82% | 27.18% |
| Temperate Japonica | 328 | 22.56% | 77.44% |
| Tropical Japonica | 90 | 76.67% | 23.33% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400286930 | G->T | INTERGENIC | None |