Detailed information of SNP:
|
SNP ID:
sf0400300685(Gbrowse)
Chromosome: chr04 Position: 300685 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 89.22% | 10.78% |
| All Indica | 794 | 95.97% | 4.03% |
| All Japonica | 476 | 75.84% | 24.16% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 316 | 70.25% | 29.75% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400300685 | G->A | LOC_Os04g01439(LOC_Os04g01439.1) | Synonymous |