Detailed information of SNP:
|
SNP ID:
sf0400371960(Gbrowse)
Chromosome: chr04 Position: 371960 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 53.67% | 46.33% |
| All Indica | 796 | 49.50% | 50.50% |
| All Japonica | 497 | 67.00% | 33.00% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 26.47% | 73.53% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400371960 | C->A | INTERGENIC | None |