Detailed information of SNP:
|
SNP ID:
sf0400372810(Gbrowse)
Chromosome: chr04 Position: 372810 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 51.49% | 48.51% |
| All Indica | 797 | 45.92% | 54.08% |
| All Japonica | 497 | 66.20% | 33.80% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 373 | 23.59% | 76.41% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400372810 | G->A | INTERGENIC | None |