Detailed information of SNP:
|
SNP ID:
sf0400387455(Gbrowse)
Chromosome: chr04 Position: 387455 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.22% | 10.78% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 82.70% | 17.30% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400387455 | C->A | INTERGENIC | None |