Detailed information of SNP:
|
SNP ID:
sf0400391418(Gbrowse)
Chromosome: chr04 Position: 391418 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400391418 | G->A | INTERGENIC | None |