Detailed information of SNP:
|
SNP ID:
sf0400396489(Gbrowse)
Chromosome: chr04 Position: 396489 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 89.57% | 10.43% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 459 | 70.15% | 29.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 302 | 61.59% | 38.41% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 63 | 80.95% | 19.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400396489 | G->T | LOC_Os04g01590(LOC_Os04g01590.1) | INTRON |