Detailed information of SNP:
|
SNP ID:
sf0400435152(Gbrowse)
Chromosome: chr04 Position: 435152 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 67.73% | 32.27% |
| All Indica | 793 | 43.63% | 56.37% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 22.58% | 77.42% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400435152 | G->A | INTERGENIC | None |