Detailed information of SNP:
|
SNP ID:
sf0400437882(Gbrowse)
Chromosome: chr04 Position: 437882 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.63% | 32.37% |
| All Indica | 798 | 88.47% | 11.53% |
| All Japonica | 497 | 32.39% | 67.61% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 38.21% | 61.79% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400437882 | A->G | INTERGENIC | None |