Detailed information of SNP:
|
SNP ID:
sf0400438208(Gbrowse)
Chromosome: chr04 Position: 438208 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 77.57% | 22.43% |
| All Indica | 798 | 89.85% | 10.15% |
| All Japonica | 497 | 69.62% | 30.38% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400438208 | A->G | INTERGENIC | None |