Detailed information of SNP:



SNP ID: sf0400438443(Gbrowse)

Chromosome: chr04

Position: 438443
Major allele: T

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1416 84.75% 15.25%
All Indica799 99.87% 0.13%
All Japonica496 59.48% 40.52%
Aus67 98.51% 1.49%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 48.80% 51.20%
Tropical Japonica94 90.43% 9.57%
Japonica Intermediate68 69.12% 30.88%
Group VI/Aromatic14 50.00% 50.00%
Intermediate40 85.00% 15.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0400438443 G->T INTERGENIC None