Detailed information of SNP:
|
SNP ID:
sf0400441189(Gbrowse)
Chromosome: chr04 Position: 441189 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.22% | 21.78% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 44.47% | 55.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400441189 | C->T | INTERGENIC | None |