Detailed information of SNP:
|
SNP ID:
sf0400454005(Gbrowse)
Chromosome: chr04 Position: 454005 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.61% | 25.39% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400454005 | A->G | LOC_Os04g01674(LOC_Os04g01674.1) | INTRON |