Detailed information of SNP:
|
SNP ID:
sf0400454315(Gbrowse)
Chromosome: chr04 Position: 454315 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 87.37% | 12.63% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 495 | 67.47% | 32.53% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 87.09% | 12.91% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400454315 | C->T | LOC_Os04g01674(LOC_Os04g01674.1) | INTRON |