Detailed information of SNP:
|
SNP ID:
sf0400455617(Gbrowse)
Chromosome: chr04 Position: 455617 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.17% | 20.83% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400455617 | C->T | LOC_Os04g01674(LOC_Os04g01674.1) | Synonymous |