Detailed information of SNP:
|
SNP ID:
sf0400467556(Gbrowse)
Chromosome: chr04 Position: 467556 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1248 | 90.71% | 9.29% |
| All Indica | 789 | 99.75% | 0.25% |
| All Japonica | 342 | 66.96% | 33.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 295 | 62.71% | 37.29% |
| Tropical Japonica | 19 | 100.00% | 0.00% |
| Japonica Intermediate | 28 | 89.29% | 10.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400467556 | G->A | INTERGENIC | None |