Detailed information of SNP:
|
SNP ID:
sf0400480534(Gbrowse)
Chromosome: chr04 Position: 480534 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 77.94% | 22.06% |
| All Indica | 793 | 97.23% | 2.77% |
| All Japonica | 485 | 43.09% | 56.91% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 323 | 24.77% | 75.23% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400480534 | T->C | INTERGENIC | None |