Detailed information of SNP:
|
SNP ID:
sf0400482851(Gbrowse)
Chromosome: chr04 Position: 482851 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 71.65% | 28.35% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 36.29% | 63.71% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 15.57% | 84.43% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400482851 | A->C | LOC_Os04g01740(LOC_Os04g01740.1) | INTRON |