Detailed information of SNP:
|
SNP ID:
sf0400556048(Gbrowse)
Chromosome: chr04 Position: 556048 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 97.39% | 2.61% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 459 | 92.16% | 7.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 90.73% | 9.27% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400556048 | A->C | INTERGENIC | None |