Detailed information of SNP:
|
SNP ID:
sf0400576517(Gbrowse)
Chromosome: chr04 Position: 576517 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 89.03% | 10.97% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 492 | 71.14% | 28.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 88.62% | 11.38% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400576517 | A->G | INTERGENIC | None |