Detailed information of SNP:
|
SNP ID:
sf0400612918(Gbrowse)
Chromosome: chr04 Position: 612918 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.89% | 25.11% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 36.02% | 63.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 17.31% | 82.69% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400612918 | T->C | LOC_Os04g01990(LOC_Os04g01990.1) | UTR_3_PRIME |