Detailed information of SNP:
|
SNP ID:
sf0400639862(Gbrowse)
Chromosome: chr04 Position: 639862 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 80.10% | 19.90% |
| All Indica | 788 | 99.11% | 0.89% |
| All Japonica | 494 | 47.17% | 52.83% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 334 | 31.14% | 68.86% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400639862 | G->T | LOC_Os04g02030(LOC_Os04g02030.1) | Non-Synonymous SNP |