Detailed information of SNP:
|
SNP ID:
sf0400643327(Gbrowse)
Chromosome: chr04 Position: 643327 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 95.60% | 4.40% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 467 | 89.08% | 10.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 95.47% | 4.53% |
| Tropical Japonica | 76 | 69.74% | 30.26% |
| Japonica Intermediate | 60 | 78.33% | 21.67% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400643327 | G->A | LOC_Os04g02040(LOC_Os04g02040.1) | Non-Synonymous SNP |