Detailed information of SNP:
|
SNP ID:
sf0400651452(Gbrowse)
Chromosome: chr04 Position: 651452 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1249 | 55.00% | 45.00% |
| All Indica | 750 | 82.40% | 17.60% |
| All Japonica | 395 | 10.89% | 89.11% |
| Aus | 60 | 13.33% | 86.67% |
| Indica I | 368 | 89.13% | 10.87% |
| Indica II | 185 | 69.73% | 30.27% |
| Indica Intermediate | 197 | 81.73% | 18.27% |
| Temperate Japonica | 300 | 6.33% | 93.67% |
| Tropical Japonica | 56 | 35.71% | 64.29% |
| Japonica Intermediate | 39 | 10.26% | 89.74% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 32 | 53.12% | 46.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400651452 | A->G | INTERGENIC | None |