Detailed information of SNP:
|
SNP ID:
sf0400651503(Gbrowse)
Chromosome: chr04 Position: 651503 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 81.10% | 18.90% |
| All Indica | 780 | 90.77% | 9.23% |
| All Japonica | 493 | 73.23% | 26.77% |
| Aus | 50 | 22.00% | 78.00% |
| Indica I | 368 | 92.93% | 7.07% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 201 | 89.05% | 10.95% |
| Temperate Japonica | 333 | 90.09% | 9.91% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400651503 | C->T | INTERGENIC | None |