Detailed information of SNP:
|
SNP ID:
sf0400659142(Gbrowse)
Chromosome: chr04 Position: 659142 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 69.18% | 30.82% |
| All Indica | 798 | 85.96% | 14.04% |
| All Japonica | 497 | 36.42% | 63.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 17.61% | 82.39% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400659142 | G->A | INTERGENIC | None |