Detailed information of SNP:
|
SNP ID:
sf0400675400(Gbrowse)
Chromosome: chr04 Position: 675400 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 74.42% | 25.58% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 35.01% | 64.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400675400 | C->T | LOC_Os04g02090(LOC_Os04g02090.1) | Synonymous |