Detailed information of SNP:
|
SNP ID:
sf0400675504(Gbrowse)
Chromosome: chr04 Position: 675504 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 74.79% | 25.21% |
| All Indica | 777 | 96.78% | 3.22% |
| All Japonica | 497 | 36.22% | 63.78% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 358 | 94.97% | 5.03% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 16.42% | 83.58% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400675504 | T->C | LOC_Os04g02090(LOC_Os04g02090.1) | Non-Synonymous SNP |