Detailed information of SNP:
|
SNP ID:
sf0400677100(Gbrowse)
Chromosome: chr04 Position: 677100 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 67.84% | 32.16% |
| All Indica | 733 | 87.99% | 12.01% |
| All Japonica | 479 | 32.36% | 67.64% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 338 | 84.91% | 15.09% |
| Indica II | 197 | 89.85% | 10.15% |
| Indica Intermediate | 198 | 91.41% | 8.59% |
| Temperate Japonica | 331 | 15.41% | 84.59% |
| Tropical Japonica | 84 | 77.38% | 22.62% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400677100 | T->C | INTERGENIC | None |