Detailed information of SNP:
|
SNP ID:
sf0400689169(Gbrowse)
Chromosome: chr04 Position: 689169 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 64.20% | 35.80% |
| All Indica | 791 | 80.28% | 19.72% |
| All Japonica | 497 | 34.00% | 66.00% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 209 | 64.59% | 35.41% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400689169 | C->T | INTERGENIC | None |