Detailed information of SNP:
|
SNP ID:
sf0400689240(Gbrowse)
Chromosome: chr04 Position: 689240 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 79.13% | 20.87% |
| All Indica | 784 | 92.35% | 7.65% |
| All Japonica | 497 | 54.93% | 45.07% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 40.90% | 59.10% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400689240 | A->G | INTERGENIC | None |