Detailed information of SNP:
|
SNP ID:
sf0400743236(Gbrowse)
Chromosome: chr04 Position: 743236 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 72.23% | 27.77% |
| All Indica | 798 | 84.21% | 15.79% |
| All Japonica | 487 | 49.08% | 50.92% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 71.23% | 28.77% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 334 | 59.28% | 40.72% |
| Tropical Japonica | 86 | 24.42% | 75.58% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400743236 | G->C | INTERGENIC | None |