Detailed information of SNP:
|
SNP ID:
sf0400762214(Gbrowse)
Chromosome: chr04 Position: 762214 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 66.33% | 33.67% |
| All Indica | 760 | 80.39% | 19.61% |
| All Japonica | 494 | 55.06% | 44.94% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 352 | 79.26% | 20.74% |
| Indica II | 207 | 82.61% | 17.39% |
| Indica Intermediate | 201 | 80.10% | 19.90% |
| Temperate Japonica | 332 | 42.77% | 57.23% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400762214 | C->A | LOC_Os04g02220(LOC_Os04g02220.1) | INTRON |