Detailed information of SNP:
|
SNP ID:
sf0400770373(Gbrowse)
Chromosome: chr04 Position: 770373 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 91.43% | 8.57% |
| All Indica | 770 | 85.19% | 14.81% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 359 | 83.84% | 16.16% |
| Indica II | 206 | 89.32% | 10.68% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400770373 | A->G | INTERGENIC | None |