Detailed information of SNP:
|
SNP ID:
sf0400774321(Gbrowse)
Chromosome: chr04 Position: 774321 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 72.89% | 27.11% |
| All Indica | 781 | 53.91% | 46.09% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 365 | 58.36% | 41.64% |
| Indica II | 211 | 48.82% | 51.18% |
| Indica Intermediate | 205 | 51.22% | 48.78% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400774321 | T->C | LOC_Os04g02240(LOC_Os04g02240.1) | INTRON |