Detailed information of SNP:
|
SNP ID:
sf0400790794(Gbrowse)
Chromosome: chr04 Position: 790794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 91.25% | 8.75% |
| All Indica | 796 | 94.35% | 5.65% |
| All Japonica | 486 | 84.57% | 15.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 326 | 79.14% | 20.86% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400790794 | C->T | INTERGENIC | None |