Detailed information of SNP:
|
SNP ID:
sf0400841554(Gbrowse)
Chromosome: chr04 Position: 841554 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 95.73% | 4.27% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 482 | 90.25% | 9.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 90.68% | 9.32% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400841554 | C->T | INTERGENIC | None |