Detailed information of SNP:
|
SNP ID:
sf0400843895(Gbrowse)
Chromosome: chr04 Position: 843895 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 68.16% | 31.84% |
| All Indica | 792 | 79.67% | 20.33% |
| All Japonica | 495 | 45.86% | 54.14% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 88.20% | 11.80% |
| Indica II | 208 | 70.19% | 29.81% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 334 | 25.15% | 74.85% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400843895 | T->C | LOC_Os04g02370(LOC_Os04g02370.1) | INTRON |