Detailed information of SNP:
|
SNP ID:
sf0400870651(Gbrowse)
Chromosome: chr04 Position: 870651 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1354 | 98.15% | 1.85% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 437 | 95.65% | 4.35% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 287 | 95.47% | 4.53% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 60 | 91.67% | 8.33% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400870651 | T->A | INTERGENIC | None |