Detailed information of SNP:
|
SNP ID:
sf0400897122(Gbrowse)
Chromosome: chr04 Position: 897122 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.25% | 8.75% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 76.16% | 23.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 75.15% | 24.85% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400897122 | G->A | INTERGENIC | None |