Detailed information of SNP:
|
SNP ID:
sf0400898653(Gbrowse)
Chromosome: chr04 Position: 898653 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 71.55% | 28.45% |
| All Indica | 794 | 96.85% | 3.15% |
| All Japonica | 490 | 27.76% | 72.24% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 330 | 7.58% | 92.42% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400898653 | G->T | INTERGENIC | None |