Detailed information of SNP:
|
SNP ID:
sf0400906136(Gbrowse)
Chromosome: chr04 Position: 906136 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.59% | 17.41% |
| All Indica | 799 | 70.59% | 29.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 41.31% | 58.69% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400906136 | A->T | LOC_Os04g02500(LOC_Os04g02500.4) | INTRON |
| sf0400906136 | A->T | LOC_Os04g02500(LOC_Os04g02500.3) | INTRON |
| sf0400906136 | A->T | LOC_Os04g02500(LOC_Os04g02500.2) | INTRON |
| sf0400906136 | A->T | LOC_Os04g02500(LOC_Os04g02500.1) | INTRON |